The current study analysed spatial-temporal modifications of the phytoplankton community and water quality, during dry and wet seasons. The phytoplankton community was studied in three areas: Armando Ribeiro Gonçalves Reservoir (ARG), which is an important public use reservoir in RN, Pataxó Channel (PC-before water treatment), Itajá, RN, and after the water treatment (WTP). Water samples from the reservoir were collected during both dry (January, February and November, 2006) and wet seasons (March to June, 2006). Quali-quantitative analyses of phytoplankton were carried out.